Arabidopsis Motif Scanner

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The RING finger motif of photomorphogenic repressor COP1 specifically interacts with the RING-H2 motif of a novel Arabidopsis protein.

The constitutive photomorphogenic 1 (COP1) protein of Arabidopsis functions as a molecular switch for the seedling developmental fates: photomorphogenesis under light conditions and skotomorphogenesis in darkness. The COP1 protein contains a cysteine-rich zinc-binding RING finger motif found in diverse groups of regulatory proteins. To understand the role of the COP1 RING finger in mediating pr...

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Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection.

Recognition of microbial patterns by host pattern recognition receptors is a key step in immune activation in multicellular eukaryotes. Peptidoglycans (PGNs) are major components of bacterial cell walls that possess immunity-stimulating activities in metazoans and plants. Here we show that PGN sensing and immunity to bacterial infection in Arabidopsis thaliana requires three lysin-motif (LysM) ...

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Two - Component Response Regulators Putative DNA - Binding Motif from Arabidopsis thaliana Contain a

served. This is where a phosphate rece;ver domain with the landmark aspartate residue and a putative DNA-binding domain were located. Their carboxyl-terminal halyes, although less simi]ar to each other, included giutamine-rich and proline-rich regio"s characteristic of the transcriptional activation domain of eukaryotes. This architecture resemb]es that of typical bacterial response regulators ...

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Ring finger motif of Arabidopsis thaliana COP1 defines a new class of zinc-binding domain.

The COP1 gene of Arabidopsis thaliana encodes a protein mediating the switch between the two developmental pathways utilized in light and darkness. A cysteine-rich motif identified the COP1 protein as a member of a group of regulatory proteins which share the amino acid motif Cys-X-X-Cys-loop I-Cys-X-His-X-X-Cys-X-X-Cys-loop II-Cys-X-X-Cys (ring finger). Although this new class of cysteine-rich...

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A novel Arabidopsis DNA binding protein contains the conserved motif of HMG-box proteins.

We have isolated cDNA clones from a lambda gtll library of mRNA prepared from rosette plants of Arabidopsis thaUana to identify DNA binding proteins that bind to the promoter region of the desiccation-responsive rd29A gene (1, 2, 3). We used a 40 bp conserved sequence (3) in the promoter regions of rd29A and rd29B genes, which may contain enhancer-like sequence(s), as a probe for the screening....

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ژورنال

عنوان ژورنال: BMC Bioinformatics

سال: 2016

ISSN: 1471-2105

DOI: 10.1186/s12859-016-0896-x